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- H3K27me3 ChIP-seq
Chromatin immuniprecipitation using an antibody to H3K27me3, a repressive chromatin mark.
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- Schulz RNA-seq
1.The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA Regulski, et al., 2013
Data Summary
- Study description: A cytosine methylation genome-wide map for B73 and Mo17.
- Genotypic Data: Can be found on NBCA SRI - SRP014211
- Sample Size: Sample size is unknown
- Tissue: Shoots at coleoptilar stage
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- Atlas and Time Series RNA-seq Data Sets
Some RNA-seq data sets for certain lines collected on different tissues or measured at different developmental stages.
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- RIL RNA-seq Data Sets
Some RNA-seq data sets for RIL popualtions.
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- MAGIC population
1. Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays o Dell’Acqua, 2015
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- Large amounts of unpublished WGS data
A large WGS dataset from SRA
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- Chromatin Accessibility
Datasets assessing chromatin accessibility.
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- Metabolomics data from natural variation studies
Several studies on maize natural variation of metabolomics traits.
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- RNA-seq datasets with GxE
Some datasets with information about genetic differences for expression response to various stimuli (some stressful perhaps).
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- Some Large Diversity RNA-seq Data Sets
Some large scale RNA-seq data sets for diverse lines.
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- SNP-chip Diversity